Pease visit github.com/rjchallis/assembly_stats for the most up to date documentation
Click on any colour tile in the legend to toggle visibility of that feature on/off
The radius of the central plot represents the length of the longest scaffold in the assembly
The angle subtended by the first (red) segment within this plot indicates the percentage of the assembly that is in the longest scaffold
The radial axis originates at the circumference and indicates scaffold length, this is on a square-root scale
Subsequent (grey) segments are plotted from the circumference and the length of segment at a given percentage indicates the cumulative percentage of the assembly that is contained within scaffolds of at least that length
The N50 and N90 scaffold lengths are indicated respectively by dark and light orange arcs that connect to the radial axis for ease of comparison
The cumulative number of scaffolds within a given percentage of the genome is plotted in purple originating at the centre of the plot
White scale lines are drawn at successive orders of magnitude from 10 scaffolds onwards
The fill colour of the circumferential axis indicates the percentage base composition of the assembly: AT = light blue; GC = dark blue; N = grey
Contig length (off by default) is indicated by darker grey segments overlaying the scaffold length plot
Contig count (off by default) may be toggled on to be shown in place of the scaffold count plot
Partial and complete BUSCO values are shown in light and dark green, respectively in the smaller plot in the upper right corner